About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019801.1_1749_1834_F


Intron Information:

Intron Rank:
2

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
1749 - 1834

Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCG|GTGGGTGAG

5'SS Class:
major

3'SS Sequence:
CCTCTTCGTGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GGCTGAT

U12 Branch Point Sequence:
GGGGGCTGATTC

Flanking Amino Acid:
LLGIVGCIGIGATCVLKEKF

Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
71.4
0.5
1.1
59.7
41.3

Major BPS
58.4
0.21
1.4
51.1
46.3

Major PPT
77.1
0.61
0.9
72.2
32.4

Minor 5ss
25.7
-2.8
3.2
30.8
43.2

Minor BPS
38.3
-0.9
1.9
40.27
39.6

Associated Gene:

Gene:
SLC27A3

Ensembl Gene ID:

Chromosome:
PEDO01019801.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

21 - 3975
3955

21 - 3975
3955