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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019801.1_3179_3266_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3179 - 3266
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
GTCGCCGCGCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCAGCAC
U12 Branch Point Sequence:
GGGCCCAGCACC
Flanking Amino Acid:
YAQPRFLRLQERLEMTATFK
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
41.5
-0.5
1.3
43
37.8
Major PPT
55.5
0.12
1.1
46.5
41.5
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
40.8
-0.7
2
47.8
40.8

Associated Gene:

Gene:
SLC27A3
Ensembl Gene ID:
ENSAPLG00000026857
Chromosome:
PEDO01019801.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024963
21 - 3975
3955