Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019875.1_10454_10585_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10454 - 10585

Intron Length:

132

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTACCCAGG

5'SS Class:

weak_major

3'SS Sequence:

CCCCTCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAT

U12 Branch Point Sequence:

GCTGGCTCATGT

Flanking Amino Acid:

EYLIVQRPSSGLLAGLWEFP

Intron Amino Acid Position:

301

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.1

0.12

1.3

45.6

49.6

Major BPS

0.3

1.3

65.3

43.7

Major PPT

72.8

0.51

0.8

64.3

Minor 5ss

42.8

-0.8

2.9

48.9

46.9

Minor BPS

37.7

-0.8

2.3

52.14

48.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007211

Chromosome:

PEDO01019875.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007478

9210 - 12538

3329