Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019875.1_10772_10848_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10772 - 10848

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTAAGCACC

5'SS Class:

strong_major

3'SS Sequence:

GTGGTGCTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

TCTGCTGTGACC

Flanking Amino Acid:

LPPVPDVEDCGVGDCPLCPP

Intron Amino Acid Position:

239

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

70.1

40.6

Major BPS

0.22

1.2

52.4

43.3

Major PPT

0.45

61.9

44.4

Minor 5ss

41.1

-1

2.8

54.5

42.5

Minor BPS

49.2

-0

2.1

64.69

42.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007211

Chromosome:

PEDO01019875.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007478

9210 - 12538

3329