Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019875.1_12111_12238_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12111 - 12238

Intron Length:

128

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CCCTGCTCTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

CCCTTGTCACCT

Flanking Amino Acid:

VIDYYNRWMQKWPTLQALAE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.2

0.99

0.7

26.7

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

75.3

0.57

0.8

68.4

31.9

Minor 5ss

29.9

-2.3

3.2

41.3

45.2

Minor BPS

40.4

-0.6

2.3

54.4

47.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007211

Chromosome:

PEDO01019875.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007478

9210 - 12538

3329