Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019875.1_3773_4399_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3773 - 4399

Intron Length:

627

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GGG|GCTGCTGTG

5'SS Class:

weak_major

3'SS Sequence:

GAGAGAGCCCCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CCCTCACCACCA

Flanking Amino Acid:

RGASSPAGKREPSGDHRAAA

Intron Amino Acid Position:

192

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

51.5

0.04

1.4

56.2

45.7

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

48.3

-0.1

1.1

32.3

41.1

Minor 5ss

-2.8

4.1

32.2

42.6

Minor BPS

37.6

-0.9

2.1

44.96

43.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030793

Chromosome:

PEDO01019875.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035738

3669 - 5207

1539