About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019875.1_4576_4691_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4576 - 4691
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGGCT
5'SS Class:
major
3'SS Sequence:
CTCTGTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CATCCCCTACTC
Flanking Amino Acid:
GDKDDFLVYDRCGRLAFHIQ
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
66.9
38.5
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.8
0.56
0.8
68.9
31.6
Minor 5ss
26.9
-2.7
3.5
39.6
45.9
Minor BPS
47
-0.2
1.9
57.66
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030793
Chromosome:
PEDO01019875.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035738
3669 - 5207
1539