About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019877.1_624_971_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
624 - 971
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
CCCGACGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCTTCCTCACGC
Flanking Amino Acid:
RRRIITKAYREPLKSLRPKK
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
54.8
44.4
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
62.1
0.27
1
53.3
36.3
Minor 5ss
22.7
-3.1
3.2
20
37.8
Minor BPS
46.7
-0.2
2.1
57.89
47.1

Associated Gene:

Gene:
VPS72
Ensembl Gene ID:
ENSAPLG00000015112
Chromosome:
PEDO01019877.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015750
21 - 2388
2368