Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019888.1_102044_102649_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

102044 - 102649

Intron Length:

606

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAGGTACC

5'SS Class:

strong_major

3'SS Sequence:

GCTGTGCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCCAG

U12 Branch Point Sequence:

GGCGTCCTAGCG

Flanking Amino Acid:

GSAPAAAKTQVAAMGCRAFA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.2

1.02

0.8

87.9

22.6

Major BPS

43.3

-0.4

1.6

52.1

45.2

Major PPT

65.5

0.35

57.1

38.8

Minor 5ss

25.3

-2.8

3.8

36.9

40.4

Minor BPS

41.1

-0.8

1.9

40.98

43.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003756

Chromosome:

PEDO01019888.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003846

92888 - 108356

15469

ENSAPLT00000035658

92888 - 108356

15469