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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019888.1_10652_16031_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10652 - 16031
Intron Length:
5380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CTGGCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
AGCACGGTGACC
Flanking Amino Acid:
FIVRSRHLFAQLYEGKETAE
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
71.7
0.49
1
64.8
41.3
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
39.8
-0.8
2.5
49.2
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004786
Chromosome:
PEDO01019888.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005136
75 - 51818
51744