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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019888.1_112380_115864_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
112380 - 115864
Intron Length:
3485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGATTTTTCACT
Flanking Amino Acid:
IGVMMLTLTPSILAELKLRD
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
80.6
31.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
83.5
0.75
0.8
77.6
30.7
Minor 5ss
41.4
-1
3.1
59
45.7
Minor BPS
60.2
0.4
1.7
76.8
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004430
Chromosome:
PEDO01019888.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004551
108142 - 116415
8274