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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019888.1_60094_61860_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60094 - 61860
Intron Length:
1767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GGGTCCCTGACC
Flanking Amino Acid:
RKRALYDYARRRFSEKHGAA
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
75.8
0.58
0.8
69.7
31.1
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
56.8
0.2
1.7
64.48
40.9

Associated Gene:

Gene:
AUP1
Ensembl Gene ID:
ENSAPLG00000004504
Chromosome:
PEDO01019888.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004643
59886 - 69367
9482