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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019888.1_61950_62152_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61950 - 62152
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTTTG
5'SS Class:
major
3'SS Sequence:
TTTTCTGTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GTCTCCTGATGA
Flanking Amino Acid:
QGSVAVPTSKPATKQFAKSP
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
71.8
40.6
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
88.1
0.86
0.8
80.8
36.8
Minor 5ss
42.8
-0.8
3
58.4
46.1
Minor BPS
48
-0.1
2
60.84
44.9

Associated Gene:

Gene:
AUP1
Ensembl Gene ID:
ENSAPLG00000004504
Chromosome:
PEDO01019888.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004643
59886 - 69367
9482