Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019888.1_63719_64616_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63719 - 64616

Intron Length:

898

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACTATCT

5'SS Class:

major

3'SS Sequence:

TGTCCCCATTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

TTGTCCCCATTC

Flanking Amino Acid:

FFVPFTVYQVRWMPSVPRRA

Intron Amino Acid Position:

204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

68.1

37.6

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

0.54

0.9

70.6

35.2

Minor 5ss

39.6

-1.2

3.3

46.1

Minor BPS

46.9

-0.2

2.1

63.32

42.5

Associated Gene:

Gene:

AUP1

Ensembl Gene ID:

ENSAPLG00000004504

Chromosome:

PEDO01019888.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004643

59886 - 69367

9482