Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019888.1_64691_67635_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

64691 - 67635

Intron Length:

2945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTCTG

5'SS Class:

strong_major

3'SS Sequence:

CTCTTTTCCCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTCAT

U12 Branch Point Sequence:

TGGGCCATAACC

Flanking Amino Acid:

LQVQRPLITVSVADSSWITE

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

70.5

41.3

Major BPS

73.5

0.58

73.6

32.5

Major PPT

82.9

0.74

0.7

76.2

32.4

Minor 5ss

32.5

-2

38.1

40.9

Minor BPS

58.8

0.26

1.8

68.15

43.1

Associated Gene:

Gene:

AUP1

Ensembl Gene ID:

ENSAPLG00000004504

Chromosome:

PEDO01019888.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004643

59886 - 69367

9482