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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019888.1_67984_68908_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67984 - 68908
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCAAC
5'SS Class:
major
3'SS Sequence:
TCTTTTCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATCT
Flanking Amino Acid:
VINLLTSCNTPALNGAPGFI
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
68.8
38
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.9
0.79
0.7
80.2
25.3
Minor 5ss
34.7
-1.7
2.9
43.8
43.8
Minor BPS
73
0.8
1.5
87.26
38.7

Associated Gene:

Gene:
AUP1
Ensembl Gene ID:
ENSAPLG00000004504
Chromosome:
PEDO01019888.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004643
59886 - 69367
9482