Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019888.1_99632_100592_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

99632 - 100592

Intron Length:

961

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TCTGTCCCACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCCAGAG

U12 Branch Point Sequence:

TCTGTCCCACCA

Flanking Amino Acid:

AEINQQALETGGRALLHPSA

Intron Amino Acid Position:

273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

77.6

32.8

Major BPS

38.1

-0.7

1.4

28.3

Major PPT

71.3

0.48

0.9

63.6

38.2

Minor 5ss

30.6

-2.2

3.4

39.4

46.5

Minor BPS

42.1

-0.6

2.1

55.29

43.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000003756

Chromosome:

PEDO01019888.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035658

92888 - 108356

15469

ENSAPLT00000003846

92888 - 108356

15469