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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019891.1_816_901_R

Intron Information:

Intron Rank:
144326
Intron Class:
major
Intron Phase:
Intron Coordinates:
816 - 901
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTCAGTACT
5'SS Class:
major
3'SS Sequence:
GGCTCTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACACAT
U12 Branch Point Sequence:
TGTGCCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.3
75.7
40.1
Major BPS
57.6
0.19
1
64.6
32.2
Major PPT
76
0.59
0.9
69.1
37
Minor 5ss
34.3
-1.8
2.7
45.7
41.7
Minor BPS
50.9
0.02
2.1
68.35
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024914
Chromosome:
PEDO01019891.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048382
21 - 1412
1392