Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_10403_11500_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10403 - 11500

Intron Length:

1098

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGCTGG

5'SS Class:

major

3'SS Sequence:

TGTGTCCTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTGCAT

U12 Branch Point Sequence:

TGTGTCCTGACA

Flanking Amino Acid:

GQPPSPRAQSVVDDESASVY

Intron Amino Acid Position:

609

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.2

53.6

46.1

Major BPS

59.8

0.25

1.5

71.4

45.1

Major PPT

70.5

0.46

1.1

65.3

41.2

Minor 5ss

45.2

-0.5

2.9

56.4

47.8

Minor BPS

52.6

0.08

1.8

67.45

38.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016114

Chromosome:

PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046232

10284 - 36217

25934

ENSAPLT00000041160

8447 - 36217

27771

ENSAPLT00000037504

8447 - 24757

16311