Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_11602_11799_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

11602 - 11799

Intron Length:

198

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

GGGGTTTTAATG

Flanking Amino Acid:

AEQKRLEEEQRNKRKERDYL

Intron Amino Acid Position:

576

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

80.5

33.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

86.6

0.82

0.7

84.2

23.8

Minor 5ss

31.4

-2.1

2.9

42.1

44.5

Minor BPS

49.5

-0.1

1.5

47.56

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016114

Chromosome:

PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041160

8447 - 36217

27771

ENSAPLT00000037504

8447 - 24757

16311

ENSAPLT00000016844

9743 - 24757

15015

ENSAPLT00000046232

10284 - 36217

25934