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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_12573_12868_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12573 - 12868
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTGCAG
U12 Branch Point Sequence:
TCCTCCTGCAGT
Flanking Amino Acid:
PDTGPIIVHCSAGIGRTGTI
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
67.4
39.1
Major BPS
40.6
-0.5
1.6
48.7
45.1
Major PPT
88.8
0.87
0.6
81.4
30.7
Minor 5ss
30.6
-2.2
3.5
42.6
44.4
Minor BPS
47.8
-0
2.2
68.08
48.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016114
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041160
8447 - 36217
27771
ENSAPLT00000037504
8447 - 24757
16311
ENSAPLT00000016844
9743 - 24757
15015
ENSAPLT00000046232
10284 - 36217
25934