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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_13024_13189_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13024 - 13189
Intron Length:
166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
CTGCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GTGTCCTGACCA
Flanking Amino Acid:
RELEIARTDRDERPRVVKHY
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
71.8
0.49
0.8
65.7
30.3
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
58.2
0.25
1.8
69.13
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016114
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041160
8447 - 36217
27771
ENSAPLT00000037504
8447 - 24757
16311
ENSAPLT00000016844
9743 - 24757
15015
ENSAPLT00000046232
10284 - 36217
25934