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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_13322_13839_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13322 - 13839
Intron Length:
518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CACGTTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TCCCCACTAACG
Flanking Amino Acid:
MTTKEVERGRNKCFRYWPDK
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.8
40.2
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
68.5
0.42
1
61.2
39.8
Minor 5ss
34.8
-1.7
2.8
36.3
40.5
Minor BPS
47.3
-0.3
2
54.87
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016114
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016844
9743 - 24757
15015
ENSAPLT00000046232
10284 - 36217
25934
ENSAPLT00000041160
8447 - 36217
27771
ENSAPLT00000037504
8447 - 24757
16311