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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_15169_15552_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15169 - 15552
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGGAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTACCCAGAACG
Flanking Amino Acid:
AKQGFWEEFEMLQQQECKLL
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
74.8
35.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
73.6
0.53
0.9
66.1
35.3
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
53.1
-0
1.8
64.52
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016114
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041160
8447 - 36217
27771
ENSAPLT00000037504
8447 - 24757
16311
ENSAPLT00000016844
9743 - 24757
15015
ENSAPLT00000046232
10284 - 36217
25934