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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_16041_16118_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16041 - 16118
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCCAT
5'SS Class:
major
3'SS Sequence:
CGCCCTCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
CGAGTCTCACCG
Flanking Amino Acid:
HVTHVMIHYQPDGKYDVGGG
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
64.9
42.8
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
72.2
0.5
0.8
65.1
30.6
Minor 5ss
32.7
-2
3.4
46.2
49.1
Minor BPS
41.7
-0.7
1.9
40.31
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016114
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016844
9743 - 24757
15015
ENSAPLT00000046232
10284 - 36217
25934
ENSAPLT00000041160
8447 - 36217
27771
ENSAPLT00000037504
8447 - 24757
16311