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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_16312_17369_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16312 - 17369
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CGCTGCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAC
U12 Branch Point Sequence:
TCCTCTCTAACG
Flanking Amino Acid:
PLNCQDPTSERWYHGHLTGK
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
72.3
0.55
1
73.3
28.9
Major PPT
71.7
0.49
0.9
61.4
40.1
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
59
0.14
1.8
63.42
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016114
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046232
10284 - 36217
25934
ENSAPLT00000041160
8447 - 36217
27771
ENSAPLT00000037504
8447 - 24757
16311
ENSAPLT00000016844
9743 - 24757
15015