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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_60486_60914_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60486 - 60914
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGACAT
U12 Branch Point Sequence:
TGTTCCATGACA
Flanking Amino Acid:
RGFSGAHCEKVIIEKAAGDA
Intron Amino Acid Position:
1904

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
58.8
0.22
1.2
66.8
39.9
Major PPT
80
0.68
0.8
70.6
36.2
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
70.7
0.64
1.6
80.82
34

Associated Gene:

Gene:
AGRN
Ensembl Gene ID:
ENSAPLG00000015625
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016306
57630 - 91845
34216