About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_63697_63821_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
63697 - 63821
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCGGTGCCCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCTTCCTCACCG
Flanking Amino Acid:
MGREGDFCERVTEQDLSMPF
Intron Amino Acid Position:
1677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
59
0.2
1.1
49
43.8
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
58.6
0.13
2
67.41
46.1

Associated Gene:

Gene:
AGRN
Ensembl Gene ID:
ENSAPLG00000015625
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016306
57630 - 91845
34216