Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_63957_64404_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

63957 - 64404

Intron Length:

448

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTACAGGGG

5'SS Class:

weak_major

3'SS Sequence:

CCTCGTGCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACGTGAC

U12 Branch Point Sequence:

CCGACGTGACCC

Flanking Amino Acid:

FHCECLHAYTGPTCADERNP

Intron Amino Acid Position:

1632

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.2

0.19

1.2

43.1

44.4

Major BPS

1.2

42.7

39.5

Major PPT

67.3

0.39

0.9

60.5

35.3

Minor 5ss

26.5

-2.7

3.6

28.8

43.7

Minor BPS

38.6

-0.8

2.2

43.12

44.3

Associated Gene:

Gene:

AGRN

Ensembl Gene ID:

ENSAPLG00000015625

Chromosome:

PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016306

57630 - 91845

34216