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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_68797_69893_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
68797 - 69893
Intron Length:
1097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TCCCTCCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TTTGTCTTTTCT
Flanking Amino Acid:
AADAEGSNCPATKVFQGVLI
Intron Amino Acid Position:
1183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
59.7
46.7
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
75.6
0.58
0.7
72.9
25.3
Minor 5ss
27.7
-2.6
2.7
24
36.8
Minor BPS
43.5
-0.4
3.6
79.16
43.2

Associated Gene:

Gene:
AGRN
Ensembl Gene ID:
ENSAPLG00000015625
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016306
57630 - 91845
34216