Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_70789_71055_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

70789 - 71055

Intron Length:

267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTGGGGGC

5'SS Class:

major

3'SS Sequence:

ATCGCCCTGCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCTCAT

U12 Branch Point Sequence:

CTTGCCCCATCG

Flanking Amino Acid:

PLCSEANMTKVCGSDGVTYG

Intron Amino Acid Position:

974

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.7

0.37

1.3

58.4

40.8

Major BPS

70.9

0.52

1.1

71.4

36.6

Major PPT

58.9

0.2

51.3

38.7

Minor 5ss

24.5

-2.9

3.4

32.7

42.4

Minor BPS

42.6

-0.7

2.2

52.09

Associated Gene:

Gene:

AGRN

Ensembl Gene ID:

ENSAPLG00000015625

Chromosome:

PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016306

57630 - 91845

34216