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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_71181_71374_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
71181 - 71374
Intron Length:
194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGGAC
5'SS Class:
major
3'SS Sequence:
CTCCCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CGCTTTTTATCC
Flanking Amino Acid:
SKLGMTGCEKDPSAPKSCEE
Intron Amino Acid Position:
932

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.7
36.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.5
0.53
0.7
65
30.7
Minor 5ss
23
-3.1
3.4
31.1
43.3
Minor BPS
51.7
0.03
1.6
57.65
41.9

Associated Gene:

Gene:
AGRN
Ensembl Gene ID:
ENSAPLG00000015625
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016306
57630 - 91845
34216