Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_73871_74075_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

73871 - 74075

Intron Length:

205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGACCC

5'SS Class:

major

3'SS Sequence:

CTTTCCTCCGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATAAC

U12 Branch Point Sequence:

ATAACCTGAGTG

Flanking Amino Acid:

LYVTSQGACRALATTPPPLL

Intron Amino Acid Position:

791

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

59.9

39.3

Major BPS

61.3

0.28

30.6

Major PPT

81.9

0.72

0.7

Minor 5ss

28.3

-2.5

36.1

40.2

Minor BPS

47.6

-0.3

1.8

52.9

41.5

Associated Gene:

Gene:

AGRN

Ensembl Gene ID:

ENSAPLG00000015625

Chromosome:

PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016306

57630 - 91845

34216