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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_75898_76450_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75898 - 76450
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GGGAATTAAAAC
Flanking Amino Acid:
NILVAAQGDCKSCGSTVCSF
Intron Amino Acid Position:
640

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
62.8
43.3
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
71.9
0.49
0.8
64.7
31
Minor 5ss
34.6
-1.8
3.1
46.9
42.4
Minor BPS
40.8
-0.7
1.8
42.9
37.5

Associated Gene:

Gene:
AGRN
Ensembl Gene ID:
ENSAPLG00000015625
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016306
57630 - 91845
34216