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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_76646_77449_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
76646 - 77449
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
CTCGCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATG
Flanking Amino Acid:
EIRVKHKGPCDRCGKCQFGA
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.8
45.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.1
0.52
0.8
65.6
30.3
Minor 5ss
26.7
-2.7
3
31.4
42.5
Minor BPS
78
0.74
1.1
78.3
32.8

Associated Gene:

Gene:
AGRN
Ensembl Gene ID:
ENSAPLG00000015625
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016306
57630 - 91845
34216