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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019894.1_81848_82334_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
81848 - 82334
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCCGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
TCTTCCTCCTCT
Flanking Amino Acid:
NVFKKFDGACDPCKGILNDM
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66.2
39.6
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
74.3
0.55
0.9
68.7
31.7
Minor 5ss
30.5
-2.2
2.8
37.9
39.5
Minor BPS
41.9
-0.5
3.7
75.91
46.6

Associated Gene:

Gene:
AGRN
Ensembl Gene ID:
ENSAPLG00000015625
Chromosome:
PEDO01019894.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016306
57630 - 91845
34216