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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019905.1_482_563_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
482 - 563
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
CGTGTCCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAC
U12 Branch Point Sequence:
TGCCACTTACTT
Flanking Amino Acid:
SLQEPLLEDWSLRLMPEVTI
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1
62.2
38.7
Major BPS
61.4
0.28
1
53
33.7
Major PPT
65
0.34
0.8
58
33.3
Minor 5ss
27.9
-2.5
3
27.5
37.6
Minor BPS
49.5
0.05
1.8
67.08
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024671
Chromosome:
PEDO01019905.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028206
21 - 1001
981