About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019905.1_796_877_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
796 - 877
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
CCCCCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAC
U12 Branch Point Sequence:
CATCTCTCACCC
Flanking Amino Acid:
HSPPWRQLPRRQHLRTPRRT
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
61.7
0.29
1
63.7
32.3
Major PPT
72.4
0.5
0.8
64
31.1
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
47.2
-0.2
1.8
56.79
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024671
Chromosome:
PEDO01019905.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028206
21 - 1001
981