About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019909.1_10418_11300_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
10418 - 11300

Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TTG|GTAAGTGGC

5'SS Class:
strong_major

3'SS Sequence:
CTTTCCCACACAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCCCAC

U12 Branch Point Sequence:
CTTTCCCACACA

Flanking Amino Acid:
RDVGMADKSVASGGWQEPEN

Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
86.4
0.86
0.9
72.3
37.7

Major BPS
62.4
0.31
1.2
72.4
34.6

Major PPT
74.9
0.56
0.8
69.3
30.3

Minor 5ss
33.2
-1.9
3.2
40.6
40.8

Minor BPS
47.3
-0.2
2.4
67.55
44.9

Associated Gene:

Gene:
DCTN4

Ensembl Gene ID:

Chromosome:
PEDO01019909.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

1418 - 12990
11573

1418 - 12990
11573