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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019909.1_7959_8879_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7959 - 8879
Intron Length:
921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTTTTTCTGACA
Flanking Amino Acid:
AFSQHTIHVVDKYGLGTRLQ
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
63.5
0.42
1.6
78.39
31.4

Associated Gene:

Gene:
DCTN4
Ensembl Gene ID:
ENSAPLG00000001229
Chromosome:
PEDO01019909.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001399
1418 - 12990
11573