About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019916.1_4423_4950_R

Intron Information:

Intron Rank:
133133
Intron Class:
major
Intron Phase:
Intron Coordinates:
4423 - 4950
Intron Length:
528

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTGTCCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.2
0.52
1
68.7
37.3
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
52.4
0.07
1.8
66.29
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018864
Chromosome:
PEDO01019916.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024092
4336 - 5549
1214