Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019919.1_761_1193_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

761 - 1193

Intron Length:

433

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGCGAA

5'SS Class:

strong_major

3'SS Sequence:

CCTTGTCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAC

U12 Branch Point Sequence:

TCTGTGTCACCC

Flanking Amino Acid:

VGGSFYLQSKVVRAKERLDE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

73.7

32.5

Major BPS

57.2

0.18

1.4

63.1

44.5

Major PPT

74.9

0.56

0.8

68.2

32.1

Minor 5ss

30.2

-2.3

3.3

37.1

47.5

Minor BPS

40.4

-0.7

2.4

53.1

45.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013508

Chromosome:

PEDO01019919.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014063

21 - 1366

1346