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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019941.1_2242_2350_F

Intron Information:

Intron Rank:
136433
Intron Class:
major
Intron Phase:
Intron Coordinates:
2242 - 2350
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
CGTCTCTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
CGTCTCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.6
37.6
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
74.8
0.56
0.8
68.3
32
Minor 5ss
35.3
-1.7
2.8
41.4
39.1
Minor BPS
46.3
-0.3
2
57.33
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023509
Chromosome:
PEDO01019941.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035640
2172 - 2854
683