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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019954.1_90_310_R

Intron Information:

Intron Rank:
154545
Intron Class:
major
Intron Phase:
Intron Coordinates:
90 - 310
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTCAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
CCTTCCTCAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
70.4
0.46
0.9
66.3
33.4
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
60.8
0.32
1.7
67.84
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030703
Chromosome:
PEDO01019954.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034980
21 - 1315
1295