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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019958.1_120_215_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
120 - 215
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
TGTGACCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
TCCTTGTGACCC
Flanking Amino Acid:
HCEQQLALRTVCLGEKARDE
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.1
62
38.4
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
66.7
0.38
0.9
58.2
38.2
Minor 5ss
34.8
-1.7
3.5
49.6
40.9
Minor BPS
42.6
-0.5
2.3
53.77
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025006
Chromosome:
PEDO01019958.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040924
75 - 776
702