Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019965.1_508_2093_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

508 - 2093

Intron Length:

1586

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGGT

5'SS Class:

strong_major

3'SS Sequence:

GTCTGCCCCCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCTAT

U12 Branch Point Sequence:

TGGGGCTGACCC

Flanking Amino Acid:

SEPLACPRNKYYEVEWTLWD

Intron Amino Acid Position:

110

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.9

38.2

Major BPS

48.5

-0

1.4

47.8

45.7

Major PPT

68.4

0.41

0.9

58.3

38.5

Minor 5ss

25.5

-2.8

3.5

37.8

47.1

Minor BPS

42.2

-0.6

2.1

51.46

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023517

Chromosome:

PEDO01019965.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044229

21 - 2195

2175