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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019988.1_20180_20694_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20180 - 20694

Intron Length:

515

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGATGG

5'SS Class:

strong_major

3'SS Sequence:

TCGTCTCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTACAA

U12 Branch Point Sequence:

GGTGCTACAAGT

Flanking Amino Acid:

ESKPKKKKEESEKPRGFARG

Intron Amino Acid Position:

107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.8

0.82

0.9

68.5

39.2

Major BPS

47.3

-0.1

1.2

54.9

40.8

Major PPT

82.3

0.73

0.8

76.8

31.8

Minor 5ss

31.9

-2.1

38.5

46.6

Minor BPS

-0.5

58.56

44.3

Associated Gene:

Gene:

CBX1

Ensembl Gene ID:

ENSAPLG00000007894

Chromosome:

PEDO01019988.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008207

16768 - 21566

4799

ENSAPLT00000033258

19374 - 23025

3652