Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019988.1_36934_37028_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

36934 - 37028

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGGCCA

5'SS Class:

major

3'SS Sequence:

CCGCCCCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGGTGAC

U12 Branch Point Sequence:

GGCCCGGTGACG

Flanking Amino Acid:

PEIRQLLAGSALHYFHCLRI

Intron Amino Acid Position:

102

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.5

0.58

59.6

40.8

Major BPS

47.5

-0.1

1.3

38.2

41.7

Major PPT

64.8

0.33

0.8

57.5

26.9

Minor 5ss

26.1

-2.7

3.1

31.7

42.2

Minor BPS

38.2

-1

2.5

41.41

43.1

Associated Gene:

Gene:

CDK5RAP3

Ensembl Gene ID:

ENSAPLG00000018896

Chromosome:

PEDO01019988.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047622

34217 - 38201

3985

ENSAPLT00000023879

33853 - 37457

3605