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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019988.1_41980_42127_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41980 - 42127
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGTCCC
5'SS Class:
major
3'SS Sequence:
CTGCCCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAG
U12 Branch Point Sequence:
GCCTCCTGAGGC
Flanking Amino Acid:
VFYWEPLNRQVRIEGSVRRL
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
66
39.9
Major BPS
54.8
0.12
1.6
53.3
44.2
Major PPT
68
0.4
1
61.5
34.9
Minor 5ss
29
-2.4
2.9
36.4
40.5
Minor BPS
45.3
-0.3
2
51.68
45.2

Associated Gene:

Gene:
PNPO
Ensembl Gene ID:
ENSAPLG00000029709
Chromosome:
PEDO01019988.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018446
41429 - 42374
946