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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01019988.1_42182_42296_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42182 - 42296
Intron Length:
115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TGCCCCGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CGCCCGCTGACG
Flanking Amino Acid:
NRQSRKGRELDSNPFASLVF
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.6
37.6
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
69
0.43
0.9
61.5
34.9
Minor 5ss
35.3
-1.7
2.8
41.4
39.1
Minor BPS
39.7
-0.9
2.3
41.49
43.1

Associated Gene:

Gene:
PNPO
Ensembl Gene ID:
ENSAPLG00000029709
Chromosome:
PEDO01019988.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018446
41429 - 42374
946